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Journal of Chemical Information and Modeling
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J. Chem. Inf. Model.
J. Chem. Inf. Modeling
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http://hub.abes.fr/acs/periodical/jcisd8/2005/volume_45
http://hub.abes.fr/acs/periodical/jcisd8/2006/volume_46
http://hub.abes.fr/acs/periodical/jcisd8/2007/volume_47
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Final Cut Express HD: Digital Video Editing forEveryone (Apple Pro Training) By Diana Weynand. Adobe(Peachpit) Press: Berkeley, CA. 2006. 512 pp and DVD. ISBN0-321-33533-3. Softcover. U.S. $49.99.
Journal of Chemical Information and Modeling
Use of Structure Descriptors To Discriminate between Modes of Toxic Action of Phenols
Molecular Modeling of Anti-Bredt Compounds
Human Rhinovirus 3C Protease: Generation of Pharmacophore Models for Peptidicand Nonpeptidic Inhibitors and Their Application in Virtual Screening
Molecular Modeling of DNA Cross-linking Analogues Based on the Azinomycin Scaffold
Simple Method for Identification of Skeletons of Aporphine Alkaloids from 13C NMRData Using Artificial Neural Networks
Prediction of UV and ESI−MS Signal Intensities
Lead Hopping Using SVM and 3D Pharmacophore Fingerprints
Retrospective Docking Study of PDE4B Ligands and an Analysis of the Behavior ofSelected Scoring Functions
Automatic Generation of Complementary Descriptors with Molecular Graph Networks
A Discussion of Measures of Enrichment in Virtual Screening: Comparing theInformation Content of Descriptors with Increasing Levels of Sophistication
An Automated Method for Exploring Targeted Substructural Diversity within Sets ofChemical Structures
Development and Validation of Empirical Force Field Parameters for Netropsin
QSAR Model for Predicting Pesticide Aquatic Toxicity
On Updating Torsion Angles of Molecular Conformations
Generation of a Focused Set of GSK Compounds Biased toward Ligand-GatedIon-Channel Ligands
Flux (1): A Virtual Synthesis Scheme for Fragment-Based de Novo Design
The ROBIA Program for Predicting Organic Reactivity
SOMA − Workflow for Small Molecule Property Calculations on a MultiplatformComputing Grid
Benchmarking of Linear and Nonlinear Approaches for QuantitativeStructure−Property Relationship Studies of Metal Complexation with Ionophores
Structural Unit Analysis Identifies Lead Series and Facilitates Scaffold Hopping inCombinatorial Chemistry
In Silico Analysis of the Thermodynamic Stability Changes of Psychrophilic andMesophilic α-Amylases upon Exhaustive Single-Site Mutations
2D Structure Depiction
Ligand Coordinate Analysis of SC-558 from the Active Site to the Surface of COX-2: AMolecular Dynamics Study
Unsupervised 3D Ring Template Searching as an Ideas Generator for ScaffoldHopping: Use of the LAMDA, RigFit, and Field-Based Similarity Search (FBSS)Methods
Modeling Robust QSAR
Role of Aromacity, Ring Strain, and Stereochemistry of Selected Disulfides and TheirCongeners in the Oxidative Linkage of DNA Strands at the Major Groove. AComputational Study
A Novel Method to Simulate the Hydrophobic Effect and Its Application to the Rankingof Host/Guest Complexes
Synergistic Use of Compound Properties and Docking Scores in Neural NetworkModeling of CYP2D6 Binding: Predicting Affinity and Conformational Sampling
In Vitro Drug Sensitivity-Gene Expression Correlations Involve a Tissue of OriginDependency
Pharmacophoric Fingerprint Method (TOPP) for 3D-QSAR Modeling: Application toCYP2D6 Metabolic Stability
Strain-Free Total Resonant Sextet Benzenoids and Their Antisextet Dualists andRetro-Leapfrogs
Analysis of Ligand-Bound Water Molecules in High-Resolution Crystal Structures ofProtein−Ligand Complexes
Reaction Site Mapping of Xenobiotic Biotransformations
Evaluating Virtual Screening Methods: Good and Bad Metrics for the “EarlyRecognition” Problem
Exploration of Cluster Structure−Activity Relationship Analysis in EfficientHigh-Throughput Screening
Stochastic versus Stepwise Strategies for Quantitative Structure−Activity RelationshipGenerationHow Much Effort May the Mining for Successful QSAR Models Take?
QSAR Analyses of Skin Penetration Enhancers
Molecular Basis SetsA General Similarity-Based Approach for Representing ChemicalSpaces
Rapid Estimation of Relative Protein−Ligand Binding Affinities Using aHigh-Throughput Version of MM-PBSA
Development of a Spectral Clustering Method for the Analysis of Molecular Data Sets
Gaussian Processes: A Method for Automatic QSAR Modeling of ADME Properties
ConCept: de Novo Design of Synthetic Receptors forTargeted Ligands [J. Chem. Inf. Model. 47, 425−434(2007)]
Nontraditional Careers for Chemists: New Formulas inChemistry By Lisa M. Balbes. Oxford University Press, NewYork, NY. 2007. xi + 307 pp + bibliography and indexes. ISBN0-19-518366-5, hardcover, U.S. $74.50. ISBN 0-19-518367-3,softcover, U.S. $27.95.
Meta-Code for Systematic Analysis of Chemical Addition (SACHA): Application toFluorination of C70 and Carbon Nanostructure Growth
Conformational Analysis of TMC114, a Novel HIV-1 Protease Inhibitor
Human Microsomal Prostaglandin E Synthase-1 (mPGES-1) Binding with Inhibitorsand the Quantitative Structure−Activity Correlation
Naïve Bayes Classification Using 2D Pharmacophore Feature Triplet Vectors
Chemical Descriptors Library (CDL): A Generic, Open Source Software Library for Chemical Informatics
Electronic Structure Study of Thermal Intraconversions of Some Dicyclopenta-Fused Polycyclic Aromatic Compounds
Copper(II) Ion Binding to Cellular Prion Protein
Structural Basis for Selective Inhibition of Trypanosomatid Glyceraldehyde-3-Phosphate Dehydrogenase: Molecular Docking and 3D QSAR Studies
Technique for Generating Three-Dimensional Alignments of Multiple Ligands from One-Dimensional Alignments
Web Server To Identify Similarity of Amino Acid Motifs to Compounds (SAAMCO)
MedusaScore: An Accurate Force Field-Based Scoring Function for Virtual Drug Screening
Computationally Identified Novel Diphenyl- and Phenylpyridine Androgen Receptor Antagonist Structures
Real World Adobe Photoshop CS By David Blatner andBruce Fraser. Peachpit Press: Berkeley, CA. 2004. 928 pp.Paperback. ISBN 0-321-24578-4. $49.99.
Pharmacophore Identification, in Silico Screening, and Virtual Library Design forInhibitors of the Human Factor Xa
Fluorine−Fluorine Spin−Spin Coupling Constants in Aromatic Compounds: Correlations with the Delocalization Index and with the Internuclear Separation
Periodic Cages
A Statistical Model for Predicting Protein Folding Rates from Amino Acid Sequencewith Structural Class Information
k Nearest Neighbors QSAR Modeling as a Variational Problem: Theory andApplications
Including Tightly-Bound Water Molecules in de Novo Drug Design. Exemplificationthrough the in Silico Generation of Poly(ADP-ribose)polymerase Ligands
Application of the Random Forest Method in Studies of Local Lymph Node Assay BasedSkin Sensitization Data
Nanoporous Carbon Allotropes by Septupling Map Operations
Probing Fragment Complementation by Rigid-Body Docking: in Silico Reconstitution ofCalbindin D9k
An Automated System for the Analysis of G Protein-Coupled Receptor TransmembraneBinding Pockets: Alignment, Receptor-Based Pharmacophores, and Their Application
Software Review: ChemOffice 2005 Pro by CambridgeSoft
Prediction of Properties from Simulations: A Re-examination with Modern StatisticalMethods
Molecular Dynamics Integration Meets Standard Theory of Molecular Vibrations
Membrane Switch Hypothesis. 1. Cell Density Influences Lateral Domain Structure ofTumor Cell Membranes
Biomedical Simulation of Heat Transfer in a Human Heart
Theoretical Study of Changes in π-Electron Delocalization in the Analogues of anortho-Hydroxy Schiff Base When the Proton Is Replaced with Li+ or BeH+
“Anticonnectivity”: A Challenge for Structure−Property−Activity Studies
Quantitative Structure−Activity Relationship Modeling of Juvenile Hormone MimeticCompounds for Culex Pipiens Larvae, with a Discussion of Descriptor-ThinningMethods
Videoconferencing and Other Distance Education Techniques in ChemoinformaticsTeaching and Research at Indiana University
A Searchable Database for Comparing Protein−Ligand Binding Sites for the Analysis ofStructure−Function Relationships
The Molecule Evoluator. An Interactive Evolutionary Algorithm for the Design ofDrug-Like Molecules
Pharmacophore Modeling and in Silico Screening for New P450 19 (Aromatase)Inhibitors
A QXP-Based Multistep Docking Procedure for Accurate Prediction of Protein−LigandComplexes
Instrument Monitoring, Data Sharing, and Archiving Using Common InstrumentMiddleware Architecture (CIMA)
Quantitative Structure−Activity Relationship Studies on Inhibition of HERG PotassiumChannels
Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectorieson DNA
A Distance Function for Retrieval of Active Molecules from Complex Chemical SpaceRepresentations
Classification Tree Models for the Prediction of Blood−Brain Barrier Passage of Drugs
The Effects of Biasing Torsional Mutations in a Conformational GA
Strain-Free Sextet-Resonant Benzenoids and Their Antisextet Dualists
QSAR − How Good Is It in Practice? Comparison of Descriptor Sets on an UnbiasedCross Section of Corporate Data Sets
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