Documentation scienceplus.abes.fr version Bêta

À propos de : Optimized Explicit-Solvent Replica Exchange Molecular Dynamics from Scratch        

AttributsValeurs
type
Is Part Of
Subject
Title
  • Optimized Explicit-Solvent Replica Exchange Molecular Dynamics from Scratch
has manifestation of work
related by
Author
Abstract
  • Replica exchange molecular dynamics (REMD) simulations have become an important tool to study proteins and other biological molecules in silico. However, such investigations require considerable, and often prohibitive, numerical effort when the molecules are simulated in explicit solvents. In this communication we show that in this case the cost can be minimized by choosing the number of replicas as N(opt) ≈ 1 + 0.594√C ln(Tmax/Tmin), where C is the specific heat, and the temperatures distributed according to Ti(opt) ≈ Tmin(Tmax/Tmin)(i−1)/(N−1).
is part of this journal



Alternative Linked Data Documents: ODE     Content Formats:       RDF       ODATA       Microdata