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Attributs	Valeurs
type	work Issue
Is Part Of	http://hub.abes.fr/oup/periodical/nar/2005/volume_33
has manifestation of work	http://hub.abes.fr/oup/periodical/nar/2005/volume_33/issue_suppl1/m/print http://hub.abes.fr/oup/periodical/nar/2005/volume_33/issue_suppl1/m/web
Date Copyrighted	2005
Rights	© 2005, the authors  © 2005, the authors
issue	suppl_1
Access Rights	open-access
is Is Part Of of	Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB The ProDom database of protein domain families: more emphasis on 3D The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema The EMBL Nucleotide Sequence Database CR-EST: a resource for crop ESTs The Stanford Microarray Database accommodates additional microarray platforms and data formats HAGR: the Human Ageing Genomic Resources The European Bioinformatics Institute's data resources: towards systems biology IPD—the Immuno Polymorphism Database NONCODE: an integrated knowledge database of non-coding RNAs PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures The MAPPER database: a multi-genome catalog of putative transcription factor binding sites GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts The PEDANT genome database in 2005 Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD) HCAD, closing the gap between breakpoints and genes The PANTHER database of protein families, subfamilies, functions and pathways 5′SAGE: 5′-end Serial Analysis of Gene Expression database STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information PolyA_DB: a database for mammalian mRNA polyadenylation Organelle DB: a cross-species database of protein localization and function HOPPSIGEN: a database of human and mouse processed pseudogenes BarleyBase—an expression profiling database for plant genomics The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders WormBase: a comprehensive data resource for Caenorhabditis biology and genomics DynaProt 2D: an advanced proteomic database for dynamic online access to proteomes and two-dimensional electrophoresis gels TPMD: a database and resources of microsatellite marker genotyped in Taiwanese populations DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis S4: structure-based sequence alignments of SCOP superfamilies Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes FunShift: a database of function shift analysis on protein subfamilies CDD: a Conserved Domain Database for protein classification PlantMarkers—a database of predicted molecular markers from plants T1DBase, a community web-based resource for type 1 diabetes research PartiGeneDB—collating partial genomes PROPHECY—a database for high-resolution phenomics VFDB: a reference database for bacterial virulence factors IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes DDBJ in collaboration with mass-sequencing teams on annotation 3did: interacting protein domains of known three-dimensional structure FlyBase: genes and gene models ArrayExpress—a public repository for microarray gene expression data at the EBI MetaRouter: bioinformatics for bioremediation The Universal Protein Resource (UniProt) BacMap: an interactive picture atlas of annotated bacterial genomes InterPro, progress and status in 2005 Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource ECgene: genome annotation for alternative splicing GeneTide—Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases NMPdb: Database of Nuclear Matrix Proteins REBASE—restriction enzymes and DNA methyltransferases The SYSTERS Protein Family Database in 2005 The Biomolecular Interaction Network Database and related tools 2005 update ChickVD: a sequence variation database for the chicken genome ADDA: a domain database with global coverage of the protein universe The Mouse Genome Database (MGD): from genes to mice—a community resource for mouse biology Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes VBASE2, an integrative V gene database RNAdb—a comprehensive mammalian noncoding RNA database DED: Database of Evolutionary Distances PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization Editorial RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome NCBI GEO: mining millions of expression profiles—database and tools Database resources of the National Center for Biotechnology Information Reactome: a knowledgebase of biological pathways ProtoNet 4.0: A hierarchical classification of one million protein sequences UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs NPRD: Nucleosome Positioning Region Database Ensembl 2005 TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies openSputnik—a database to ESTablish comparative plant genomics using unsaturated sequence collections Arabidopsis nucleolar protein database (AtNoPDB) SPD—a web-based secreted protein database The UCSC Proteome Browser The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms The Molecular Biology Database Collection: 2005 update STRING: known and predicted protein-protein associations, integrated and transferred across organisms PFD: a database for the investigation of protein folding kinetics and stability SIEGE: Smoking Induced Epithelial Gene Expression Database Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results PoMaMo—a comprehensive database for potato genome data NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins CYGD: the Comprehensive Yeast Genome Database

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