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Chemical Descriptors Library (CDL): A Generic, Open Source Software Library for Chemical Informatics
Speeding Up Chemical Database Searches Using a Proximity Filter Based on the Logical Exclusive OR
Chemical Markup, XML and the World-Wide Web. 8. Polymer Markup Language
Distinguishing between Bioactive and Modeled Compound Conformations through Mining of Emerging Chemical Patterns
Modeling Oral Rat Chronic Toxicity
FieldChopper, A New Tool for Automatic Model Generation and Virtual Screening Based on Molecular Fields
Solubility Challenge: Can You Predict Solubilities of 32 Molecules Using a Database of 100 Reliable Measurements?
Bit Silencing in Fingerprints Enables the Derivation of Compound Class-Directed Similarity Metrics
Toward an Improved Clustering of Large Data Sets Using Maximum Common Substructures and Topological Fingerprints
Application of Belief Theory to Similarity Data Fusion for Use in Analog Searching and Lead Hopping
Critical Assessment of QSAR Models of Environmental Toxicity against Tetrahymena pyriformis: Focusing on Applicability Domain and Overfitting by Variable Selection
Enumerating Treelike Chemical Graphs with Given Path Frequency
Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs
Ligand-Target Interaction-Based Weighting of Substructures for Virtual Screening
FieldScreen: Virtual Screening Using Molecular Fields. Application to the DUD Data Set
Discovery of Power-Laws in Chemical Space
Clustering and Classifying Diverse HIV Entry Inhibitors Using a Novel Consensus Shape-Based Virtual Screening Approach: Further Evidence for Multiple Binding Sites within the CCR5 Extracellular Pocket
Scaffold Topologies. 2. Analysis of Chemical Databases
Combined Ligand and Structure Based Approaches for Narrowing on the Essential Physicochemical Characteristics for CDK4 Inhibition
SPECTRa: The Deposition and Validation of Primary Chemistry Research Data in Digital Repositories
External Validation and Prediction Employing the Predictive Squared Correlation Coefficient Test Set Activity Mean vs Training Set Activity Mean
Core Trees and Consensus Fragment Sequences for Molecular Representation and Similarity Analysis
A Comparison of Field-Based Similarity Searching Methods: CatShape, FBSS, and ROCS
Similarity Searching Using Fingerprints of Molecular Fragments Involved in Protein−Ligand Interactions
Indirect Similarity Based Methods for Effective Scaffold-Hopping in Chemical Compounds
Support-Vector-Machine-Based Ranking Significantly Improves the Effectiveness of Similarity Searching Using 2D Fingerprints and Multiple Reference Compounds
Predictive Activity Profiling of Drugs by Topological-Fragment-Spectra-Based Support Vector Machines
Scaffold Topologies. 1. Exhaustive Enumeration up to Eight Rings
Why Are the Kinked Polyacenes More Stable than the Straight Ones? A Topological Study and Introduction of a New Topological Index of Aromaticity
Design and Exploration of Target-Selective Chemical Space Representations
Evolving Interpretable Structure−Activity Relationship Models. 2. Using Multiobjective Optimization To Derive Multiple Models
Identification and Selection of “Privileged Fragments” Suitable for Primary Screening
Structure-Based Virtual Screening with Supervised Consensus Scoring: Evaluation of Pose Prediction and Enrichment Factors
Evolving Interpretable Structure−Activity Relationships. 1. Reduced Graph Queries
SYBYL Line Notation (SLN): A Single Notation To Represent Chemical Structures, Queries, Reactions, and Virtual Libraries
Impact of Benchmark Data Set Topology on the Validation of Virtual Screening Methods: Exploration and Quantification by Spatial Statistics
Distributed Chemical Computing Using ChemStar: An Open Source Java Remote Method Invocation Architecture Applied to Large Scale Molecular Data from PubChem
Quantifying the Relationships among Drug Classes
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics
Data Mining the NCI60 to Predict Generalized Cytotoxicity
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