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Structural Basis for Selective Inhibition of Trypanosomatid Glyceraldehyde-3-Phosphate Dehydrogenase: Molecular Docking and 3D QSAR Studies
Technique for Generating Three-Dimensional Alignments of Multiple Ligands from One-Dimensional Alignments
Computationally Identified Novel Diphenyl- and Phenylpyridine Androgen Receptor Antagonist Structures
Lead Finder: An Approach To Improve Accuracy of Protein−Ligand Docking, Binding Energy Estimation, and Virtual Screening
Docking Ligands into Flexible and Solvated Macromolecules. 2. Development and Application of Fitted 1.5 to the Virtual Screening of Potential HCV Polymerase Inhibitors
Evaluation of Virtual Screening Performance of Support Vector Machines Trained by Sparsely Distributed Active Compounds
Assessing How Well a Modeling Protocol Captures a Structure−Activity Landscape
Generalized Proteochemometric Model of Multiple Cytochrome P450 Enzymes and Their Inhibitors
Global Bayesian Models for the Prioritization of Antitubercular Agents
Optimal Drug Cocktail Design: Methods for Targeting Molecular Ensembles and Insights from Theoretical Model Systems
Delineation of Agonist Binding to the Human Histamine H4 Receptor Using Mutational Analysis, Homology Modeling, and ab Initio Calculations
Molecular Docking of Cathepsin L Inhibitors in the Binding Site of Papain
Fingerprint Directed Scaffold Hopping for Identification of CCR2 Antagonists
Novel Approach to Structure-Based Pharmacophore Search Using Computational Geometry and Shape Matching Techniques
Enhancement of Ordinal CoMFA by Ridge Logistic Partial Least Squares
Identification of Hits and Lead Structure Candidates with Limited Resources by Adaptive Optimization
Discovery of Novel Cathepsin S Inhibitors by Pharmacophore-Based Virtual High-Throughput Screening
Active Site Pressurization: A New Tool for Structure-Guided Drug Design and Other Studies of Protein Flexibility
Volatile Anesthetic Binding to Proteins Is Influenced by Solvent and Aliphatic Residues
Design of Multi-Binding-Site Inhibitors, Ligand Efficiency,and Consensus Screening of Avian Influenza H5N1 Wild-Type Neuraminidaseand of the Oseltamivir-Resistant H274Y Variant
3D QSAR/CoMFA and CoMSIA Studies on Antileukemic Steroidal Esters Coupled with Conformationally Flexible Nitrogen Mustards
Investigation of MM-PBSA Rescoring of Docking Poses
Accurate and Interpretable Computational Modeling of Chemical Mutagenicity
An Integrated Approach to Ligand- and Structure-Based Drug Design: Development and Application to a Series of Serine Protease Inhibitors
Using Buriedness To Improve Discrimination between Actives and Inactives in Docking
Development and Validation of AMANDA, a New Algorithm for Selecting Highly Relevant Regions in Molecular Interaction Fields
Predicting Kinase Selectivity Profiles Using Free-Wilson QSAR Analysis
Generation of New Synthetic Scaffolds Using Framework Libraries Selected and Refined via Medicinal Chemist Synthetic Expertise
AutoShim: Empirically Corrected Scoring Functions for Quantitative Docking with a Crystal Structure and IC50 Training Data
Homology Model-Based Virtual Screening for GPCR Ligands Using Docking and Target-Biased Scoring
pKa Prediction of Monoprotic Small Molecules the SMARTS Way
Structure-Based Approach for the Study of Estrogen Receptor Binding Affinity and Subtype Selectivity
Probing the Structures of Leishmanial Farnesyl Pyrophosphate Synthases: Homology Modeling and Docking Studies
Receptor-Based Modeling and 3D-QSAR for a Quantitative Production of the Butyrylcholinesterase Inhibitors Based on Genetic Algorithm
Docking to RNA via Root-Mean-Square-Deviation-Driven Energy Minimization with Flexible Ligands and Flexible Targets
Virtual Screening Using PLS Discriminant Analysis and ROC Curve Approach: An Application Study on PDE4 Inhibitors
3D-QSAR CoMFA of a Series of DABO Derivatives as HIV-1 Reverse Transcriptase Non-Nucleoside Inhibitors
Molecule Kernels: A Descriptor- and Alignment-Free Quantitative Structure-Activity Relationship Approach
Studies of the Mechanism of Selectivity of Protein Tyrosine Phosphatase 1B (PTP1B) Bidentate Inhibitors Using Molecular Dynamics Simulations and Free Energy Calculations
Predicting the Accuracy of Ligand Overlay Methods with Random Forest Models
Surrogate AutoShim: Predocking into a Universal Ensemble Kinase Receptor for Three Dimensional Activity Prediction, Very Quickly, without a Crystal Structure
Free Energy Calculations on the Binding of Colchicine and Its Derivatives with the α/β-Tubulin Isoforms
Using Molecular Docking, 3D-QSAR, and Cluster Analysis for Screening Structurally Diverse Data Sets of Pharmacological Interest
Membrane-Interaction Quantitative Structure−Activity Relationship (MI-QSAR) Analyses of Skin Penetration Enhancers
Regioselectivity Prediction of CYP1A2-Mediated Phase I Metabolism
Kinase-Targeted Library Design through the Application of the PharmPrint Methodology
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