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  • Synthesis of a Novel Bicyclic Nucleoside Restricted to an S-TypeConformation and Initial Evaluation of Its HybridizationProperties When Incorporated into Oligodeoxynucleotides
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  • The phosphoramidite (1S,3R,4S)-3-(2-cyanoethoxy(diisopropylamino)phosphinoxymethyl)-5-N-(4-monomethoxytrityl)-1-(uracil-1-yl)-5-aza-2-oxabicyclo[2.2.1]heptane 18 of a novel bicyclic nucleosidestructure was synthesized from the known 1-(3‘-deoxy-β-d-psicofuranosyl)uracil 3. Conformationalanalysis of its structure verified its expected S-type furanose conformation, and the secondary aminogroup in the 4‘-position allowed for incorporation into oligonucleotides using 5‘ → 3‘ directedoligonucleotide synthesis as previously described for phosphoramidates. Thermal denaturationstudies showed rather large decreases in duplex stabilities of −4.3 and −2.7 °C per modificationtoward complementary DNA and RNA, respectively.
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